Bioinformatics Tools

Throughout the development of this application I have written numerous scripts to aid my research. I think it is good to share this knowledge with others that are in the bioinformatics field. Although most of the scripts I have are specific to my tasks for the Worm Structure Gallery, I am modifying them so they can be used in your projects.

Script Description
split_fasta.pl Split fasta file into smaller segments. This is useful if you have a large FASTA file that needs to be split into smaller files. I wrote this script when I needed to find the PFAM families to 5000 proteins and the PFAM server can only take in files no larger than 1000 sequences. This script is written in Perl verion 5.6.1 on Linux.