| Name | Solved Method | N-Function | C-Function | N-Gene ID | C-Gene ID | Fusion Gene ID | Query Genome (from genome) | Fusion Genome (in genome) | Fusion Score* | Separation Index** | Image |
| LmR11 | N/A1 | similar to phosphoribosyl-AMP cyclohydrolase | similar to phosphorybosil-AMP-cyclohydrolase | 16799646 | 16799645 | 20806542 | Listeria innocua | Thermoanaerobacter tengcongensis strain MB4T, complete genome | 0.82 | 1.0 | view |
| CvR16 | N/A1 | orf, hypothetical protein | GTP cyclohydrolase II | 16128766 | 16129238 | 28899855 | Escherichia coli K12 lactis | Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete sequence | 0.81 | 0.99 | view |
| MhR41 | N/A1 | hypothetical protein, similar to DNA helicase | Clumping factor B | 15925797 | 15928216 | 20088899 | Staphylococcus aureus N315 | Methanosarcina acetivorans str. C2A, complete genome | 0.51 | 0.43 | view |
| BhR21 | N/A1 | transcriptional regulator | BH1328~unknown conserved protein | 15613464 | 15613891 | 11497325 | Bacillus halodurans | Borrelia burgdorferi plasmid cp32-9, complete sequence | 0.45 | 0.36 | view |
| SR128 | N/A1 | similar to unknown protein | similar to B. subtilis comG operon protein 1 | 16800241 | 16800452 | 15603881 | Listeria innocua | Rickettsia prowazekii strain Madrid E, complete genome | 0.39 | 0.10 | view |
1N/A designates that the structure for this protein has not yet been solved.
*The fusion index is the fraction of residues of the concatenated two putative fusion genes that are chemically related to the residues of the target gene when placed in a pair-wise alignment: it is the number of dots, columns, and stars in the T-COFFEE alignment divided by the size of the length of the concatenated genes.
**The separation index is a measure for the mix between the domains of the two putative fusion genes when placed in a triple alignment to the target gene. Separation indices greater than .6 indicate a true gene fusion event